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2025-12-31
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Original Research Article
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Copyright (c) 2025 Ali Hayder Hamzah, Hussein Odia, Hamed A. Gatea, Maithm A. Obaid, Alzahraa S. Abdulwahid, Hadil Hussain Hamza, Mohannad Abdulrazzaq Gati, Aseel M. aljeboree, Ayad F. Alkaim, Ali Aqeel Mahmood

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How to Cite
Electronic, Optical, Vibrational, and Interaction Properties of Gefitinib and Quercetin: An Integrated DFT and Docking Study with Relevance to Applied Chemical Engineering
Ali Hayder Hamzah
College of Pharmacy, Al-Turath University, Baghdad, Iraq, 10012, Iraq,
Hussein Odia
Medical Technical College, Al-Farahidi University, Baghdad, Iraq.
Hamed A. Gatea
College of Applied Medical Science, Shatrah University, Thi-Qar, 64001, Iraq
Maithm A. Obaid
College of Applied Medical Science, Shatrah University, Thi-Qar, 64001, Iraq
Alzahraa S. Abdulwahid
College of Pharmacy, Al-Hadi University College, Baghdad,10011, Iraq,
Hadil Hussain Hamza
Department of Medical Laboratories Technology, Al-Nisour University College, Nisour Seq. Karkh, Baghdad, 10012,Iraq
Mohannad Abdulrazzaq Gati
College of Health and Medical Technologies, National University of Science and Technology, Dhi Qar, 64001,Iraq
Aseel M. aljeboree
Department of chemistry, College of science for women, University of Babylon, Hilla, 5001, Iraq.
Ayad F. Alkaim
Department of chemistry, College of science for women, University of Babylon, Hilla, 5001, Iraq.
Ali Aqeel Mahmood
College of Health and Medical Techniques, AL-Bayan University, Baghdad, Iraq
DOI: https://doi.org/10.59429/ace.v9i1.5772
Keywords: DFT; TD-DFT; Molecular Docking; Gefitinib; Quercetin; Interaction Properties; Applied Chemical Engineering
Abstract
We present a computational investigation of Gefitinib, a clinically approved EGFR inhibitor, and Quercetin, a bioactive flavonoid with anticancer potential, through an integrated density functional theory (DFT), time-dependent DFT (TD-DFT), and molecular docking framework. Geometry optimization at the B3LYP/6-31G(d,p) level yielded electronic and global reactivity descriptors, providing insights into molecular stability and interaction potential. Quercetin exhibited higher electronic stability, with a HOMO–LUMO gap of 5.22 eV compared to 4.24 eV for Gefitinib. TD-DFT simulations predicted key absorption bands at ~369 nm for Gefitinib and ~310 nm for Quercetin, correlating with their distinct electronic transitions. Docking studies against the EGFR tyrosine kinase domain (PDB: 4HJO) revealed stronger predicted binding for Quercetin (−8.9 kcal/mol) than Gefitinib (−5.5 kcal/mol), supported by hydrogen bonding and π–π stacking interactions. These findings highlight how computational chemistry techniques, widely applied in materials design and process optimization, can also provide multiscale insights into drug–target interactions. By integrating electronic structure analysis with molecular docking, this study demonstrates a transferable approach relevant to applied chemical engineering, bridging quantum chemistry with molecular interaction studies in pharmaceutical and materials science contexts.
References
[1]. Agarwal SM, Nandekar P, Saini R. Computational identification of natural product inhibitors against EGFR double mutant (T790M/L858R) by integrating ADMET, machine learning, molecular docking and a dynamics approach††Electronic supplementary information (ESI) available. See https://doi.org/10.1039/d2ra00373b. RSC Advances. 2022;12(26):16779-16789.
[2]. Zhao Z, Xie L, Bourne PE. Structural Insights into Characterizing Binding Sites in Epidermal Growth Factor Receptor Kinase Mutants. J Chem Inf Model. 2019;59(1):453-462.
[3]. Rehan M, Ahmed F, Khan MI, Ansari HR, Shakil S, El-Araby ME, et al. Computational insights into the stereo-selectivity of catechins for the inhibition of the cancer therapeutic target EGFR kinase. Front Pharmacol. 2023;14:1231671.
[4]. Pucci R, Angilella GGN. Density functional theory, chemical reactivity, and the Fukui functions. Foundations of Chemistry. 2022;24(1):59-71.
[5]. Hussein UAR, Abd B, Mahamda HA, Al-Rubaye AF, Altimari US, Al-Alwany AA. MOLECULAR DOCKING AND TOXICITY PROFILING OF QUERCETIN AND SILIBININ: A COMPUTATIONAL APPROACH AGAINST KEY HEPATITIS C VIRUS PROTEINS. Journal of Experimental Zoology India. 2025;28(2):1311-1318.
[6]. Alagawani S, Vasilyev V, Wang F. Optical spectra of EGFR inhibitor AG-1478 for benchmarking DFT functionals. Electronic Structure. 2023;5(2):024011.
[7]. Aljeboree AM, Radia ND, Jasim LS, Alwarthan AA, Khadhim MM, Washeel Salman A, et al. Synthesis of a new nanocomposite with the core TiO2/hydrogel: Brilliant green dye adsorption, isotherms, kinetics, and DFT studies. Journal of Industrial and Engineering Chemistry. 2022;109:475-485.
[8]. Wang Y, Li C, Li Z, Moalin M, Hartog G, Zhang M. Computational Chemistry Strategies to Investigate the Antioxidant Activity of Flavonoids-An Overview. Molecules. 2024;29(11).
[9]. Hussein UAR, Altimari US, Abid FM, Abd S, Aljeboree AM, Alkaim AF. Electronic and Structural Elucidation of ZnO-ZnS-Aniline Nanocomposite Interactions via DFT and Microscopy Techniques. Journal of Nanostructures. 2025;15(3):1025-1033.
[10]. Morris GM, Huey R, Olson AJ. Using AutoDock for ligand-receptor docking. Curr Protoc Bioinformatics. 2008;Chapter 8:Unit 8.14.
[11]. Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem. 2010;31(2):455-461.
[12]. Isa AS, Uzairu A, Umar UM, Ibrahim MT, Umar AB, Tabti K, et al. In silico exploration of novel EGFR-targeting compounds: integrative molecular modeling, docking, pharmacokinetics, and MD simulations for advancing anti-cervical cancer therapeutics. Scientific Reports. 2025;15(1):7334.
[13]. Mohammed Ahmed Mustafa, S. Raja, Layth Abdulrasool A. L. Asadi, Nashrah Hani Jamadon, N. Rajeswari, Avvaru Praveen Kumar, "A Decision-Making Carbon Reinforced Material Selection Model for Composite Polymers in Pipeline Applications", Advances in Polymer Technology, vol. 2023, Article ID 6344193, 9 pages, 2023. https://doi.org/10.1155/2023/6344193
[14]. Lazarus, B., Raja, S., Shanmugam, K., & Yishak, S. (2024). Analysis and Optimization of Thermoplastic Polyurethane Infill Patterns for Additive Manufacturing in Pipeline Applications.
[15]. Subramani, R. (2025). Optimizing process parameters for enhanced mechanical performance in 3D printed impellers using graphene-reinforced polylactic acid (G-PLA) filament. Journal of Mechanical Science and Technology, 1-11.
[16]. Subramani, R., & Yishak, S. (2024). Utilizing Additive Manufacturing for Fabricating Energy Storage Components From Graphene‐Reinforced Thermoplastic Composites. Advances in Polymer Technology, 2024(1), 6464049.
[17]. Olaiya, N. G., Maraveas, C., Salem, M. A., Raja, S., Rashedi, A., Alzahrani, A. Y., El-Bahy, Z. M., & Olaiya, F. G. (2022). Viscoelastic and Properties of Amphiphilic Chitin in Plasticised Polylactic Acid/Starch Biocomposite. Polymers, 14(11), 2268. https://doi.org/10.3390/polym14112268
[18]. Raja, S., Jayalakshmi, M., Rusho, M. A., Selvaraj, V. K., Subramanian, J., Yishak, S., & Kumar, T. A. (2024). Fused deposition modeling process parameter optimization on the development of graphene enhanced polyethylene terephthalate glycol. Scientific Reports, 14(1), 30744.
[19]. Aarthi, S., Subramani, R., Rusho, M. A., Sharma, S., Ramachandran, T., Mahapatro, A., & Ismail, A. I. (2025). Genetically engineered 3D printed functionally graded-lignin, starch, and cellulose-derived sustainable biopolymers and composites: A critical review. International Journal of Biological Macromolecules, 145843
[20]. Raja, S., Agrawal, A. P., Patil, P. P., Thimothy, P., Capangpangan, R. Y., Singhal, P., & Wotango, M. T. (2022). Optimization of 3D Printing Process Parameters of Polylactic Acid Filament Based on the Mechanical Test. 2022.
[21]. Subramani, R., Ali, R. M., Surakasi, R., Sudha, D. R., Karthick, S., Karthikeyan, S., ... & Selvaraj, V. K. (2024). Surface metamorphosis techniques for sustainable polymers: Optimizing material performance and environmental impact. Applied Chemical Engineering, 7(3), 11-11.
[22]. Raja, S., Rusho, M. A., Guru, T. S., Eldalawy, R., Hassen, A. F., Hashim, R. D., ... & Kumar, A. P. (2024). Optimizing catalytic surface coatings in FDM-Printed sustainable materials: Innovations in chemical engineering. Applied Chemical Engineering, 7(4).
[23]. Talukder MEK, Atif MF, Siddiquee NH, Rahman S, Rafi NI, Israt S, et al. Molecular docking, QSAR, and simulation analyses of EGFR-targeting phytochemicals in non-small cell lung cancer. Journal of Molecular Structure. 2025;1321:139924.
[24]. Ali A, Ali A. Identification of naturally occurring flavonoids as anticancer agents: In silico studies. Journal of the Indian Chemical Society. 2024;101(9):101227.
[25]. Raja, S., Ali, R. M., Sekhar, K. C., Jummaah, H. M., Hussain, R., Al-shammari, B. S. K., ... & Kumar, A. P. (2024). Optimization of sustainable polymer composites for surface metamorphosis in FDM processes. Applied Chemical Engineering, 7(4).
[26]. Subramani, R., Mustafa, M. A., Ghadir, G. K., Al-Tmimi, H. M., Alani, Z. K., Rusho, M. A., ... & Kumar, A. P. (2024). Advancements in 3D printing materials: A comparative analysis of performance and applications. Applied Chemical Engineering, 3867-3867.
[27]. Hussein UAR, Khudhur HR, Al-Hussainy AF, Altimari US, Abdulhussein NA, Aljeboree AM, et al. IN SILICO ANALYSIS OF WARFARIN INTERACTION WITH ACINETOBACTER BAUMANNII TARGET ENZYMES 6GIE AND 6WIL VIA MOLECULAR DOCKING. Journal of Experimental Zoology India. 2025;28(2):1239-1245.
[28]. Osamah Sabah Barrak, Slim Ben-Elechi, & Sami Chatti. (2025). Vibration Analysis of Resistance Spot Welding Joint of Similar Metals (Carbon Steel AISI 1005): A Review. Journal of Techniques, 7(1), 94–104. https://doi.org/10.51173/jt.v7i1.2667.
[29]. Becke AD. Density‐functional thermochemistry. III. The role of exact exchange. The Journal of Chemical Physics. 1993;98(7):5648-5652.
[30]. Frisch MJea. Gaussian 09 Software for Quantum Chemical Calculations. Gaussian 09, Revision A.02; Gaussian, Inc., Wallingford CT, USA, 2016.
[31]. Socrates G. Infrared and Raman Characteristic Group Frequencies: Tables and Charts. , 3rd Ed. Wiley, 2001.
[32]. Öğretir C, Kanişkan N. Frontier Orbital Theory and Chemical Reactivity: The Utility of Spectroscopy and Molecular Orbital Calculations. In: Fausto R, editor. Recent Experimental and Computational Advances in Molecular Spectroscopy. Dordrecht: Springer Netherlands; 1993. p. 351-367.
[33]. Surakasi, R., Subramani, R., Rusho, M. A., & Yishak, S. (2025). Optimization of Viscosity of Propylene Glycol and Water (50: 50)/Graphene nanofluid: A Response Surface Methodology and Machine Learning Approach. Results in Engineering, 105692
[34]. Theng, A. A. S., Jayamani, E., Subramanian, J., Selvaraj, V. K., Viswanath, S., Sankar, R., ... & Rusho, M. A. (2025). A review on industrial optimization approach in polymer matrix composites manufacturing. International Polymer Processing.
[35]. Subramani, R., Leon, R. R., Nageswaren, R., Rusho, M. A., & Shankar, K. V. (2025). Tribological Performance Enhancement in FDM and SLA Additive Manufacturing: Materials, Mechanisms, Surface Engineering, and Hybrid Strategies—A Holistic Review. Lubricants, 13(7), 298.
[36]. Domingo LR, Ríos-Gutiérrez M, Pérez P. Applications of the Conceptual Density Functional Theory Indices to Organic Chemistry Reactivity. Molecules [Internet]. 2016; 21(6).
[37]. Srivastava R. Theoretical Studies on the Molecular Properties, Toxicity, and Biological Efficacy of 21 New Chemical Entities. ACS Omega. 2021;6(38):24891-24901.
[38]. Subramani, R., Vijayakumar, P., Rusho, M. A., Kumar, A., Shankar, K. V., & Thirugnanasambandam, A. K. (2024). Selection and Optimization of Carbon-Reinforced Polyether Ether Ketone Process Parameters in 3D Printing—A Rotating Component Application. Polymers, 16(10), 1443.
[39]. S., Aarthi, S., Raja, Rusho, Maher Ali, Yishak, Simon, Bridging Plant Biotechnology and Additive Manufacturing: A Multicriteria Decision Approach for Biopolymer Development, Advances in Polymer Technology, 2025, 9685300, 24 pages, 2025. https://doi.org/10.1155/adv/9685300
[40]. Subramani Raja, Ahamed Jalaludeen Mohammad Iliyas, Paneer Selvam Vishnu, Amaladas John Rajan, Maher Ali Rusho, Mohamad Reda Refaa, Oluseye Adewale Adebimpe. Sustainable manufacturing of FDM-manufactured composite impellers using hybrid machine learning and simulation-based optimization. Materials ScienceinAdditive Manufacturing 2025, 4(3), 025200033. https://doi.org/10.36922/MSAM025200033
[41]. S., R., & A., J. R. (2023). Selection of Polymer Extrusion Parameters By Factorial Experimental Design – A Decision Making Model. Scientia Iranica, (), -. doi: 10.24200/sci.2023.60096.6591
[42]. Kabir MP, Ghosh P, Gozem S. Electronic Structure Methods for Simulating Flavin’s Spectroscopy and Photophysics: Comparison of Multi-reference, TD-DFT, and Single-Reference Wave Function Methods. The Journal of Physical Chemistry B. 2024;128(31):7545-7557.
[43]. Vásquez-Espinal A, Yañez O, Osorio E, Areche C, García-Beltrán O, Ruiz LM, et al. Theoretical Study of the Antioxidant Activity of Quercetin Oxidation Products. Front Chem. 2019;7:818.
[44]. Sepay N, Mondal R, Al-Muhanna MK, Saha D. Identification of natural flavonoids as novel EGFR inhibitors using DFT, molecular docking, and molecular dynamics. New Journal of Chemistry. 2022;46(20):9735-9744.
[45]. Kamal MA, H MB, I JH, R SA, M SH, Bakhsh T, et al. Insights from the molecular docking analysis of EGFR antagonists. Bioinformation. 2023;19(3):260-265.
[46]. Selvaraj, V. K., Subramanian, J., Krishna Rajeev, P., Rajendran, V., & Raja, S. Optimization of conductive nanofillers in bio‐based polyurethane foams for ammonia‐sensing application. Polymer Engineering & Science.
[47]. S. Raja, A. John Rajan, "Challenges and Opportunities in Additive Manufacturing Polymer Technology: A Review Based on Optimization Perspective", Advances in Polymer Technology, vol. 2023, Article ID 8639185, 18 pages, 2023. https://doi.org/10.1155/2023/8639185
[48]. Raja, S., Praveenkumar, V., Rusho, M. A., & Yishak, S. (2024). Optimizing additive manufacturing parameters for graphene-reinforced PETG impeller production: A fuzzy AHP-TOPSIS approach. Results in Engineering, 24, 103018.
[49]. Subramani, R., Kaliappan, S., Arul, P. V, Sekar, S., Poures, M. V. De, Patil, P. P., & Esakki, E. S. (2022). A Recent Trend on Additive Manufacturing Sustainability with Supply Chain Management Concept , Multicriteria Decision Making Techniques. 2022.
[50]. Subramani, R., Kaliappan, S., Sekar, S., Patil, P. P., Usha, R., Manasa, N., & Esakkiraj, E. S. (2022). Polymer Filament Process Parameter Optimization with Mechanical Test and Morphology Analysis. 2022.
[51]. Sangande F, Julianti E, Tjahjono DH. Ligand-Based Pharmacophore Modeling, Molecular Docking, and Molecular Dynamic Studies of Dual Tyrosine Kinase Inhibitor of EGFR and VEGFR2. Int J Mol Sci. 2020;21(20).
[52]. Mishra S, Pandey BK, Gupta J. Advancing understanding of molecular interactions: computational studies on DNA nucleobases and gold nanoparticles using density functional theory. Journal of Mathematical Chemistry. 2025;63(1):132-149.
[53]. Shah A, Seth AK. In Silico Identification of Novel Flavonoids Targeting Epidermal Growth Factor Receptor. Curr Drug Discov Technol. 2021;18(1):75-82.
[54]. Ashiru MA, Ogunyemi SO, Temionu OR, Ajibare AC, Cicero-Mfon NC, Ihekuna OA, et al. Identification of EGFR inhibitors as potential agents for cancer therapy: pharmacophore-based modeling, molecular docking, and molecular dynamics investigations. Journal of Molecular Modeling. 2023;29(5):128.








